re-login if refresh-token exhausted

.gitignore

@@ -195,3 +195,9 @@ Endobest Reporting/
 jsons history/
 nul
 
+# Ignore all json, exe, log and xlsx files
+*.json
+*.exe
+*.log
+/*.xlsx
+!eb_org_center_mapping.xlsx

eb_dashboard.py

@@ -21,7 +21,7 @@
 # identification, and support for complex data extraction using JSON path expressions.
 import json
 import logging
-
+import msvcrt
 import os
 import re
 import sys
@@ -118,6 +118,9 @@ access_token = ""
 refresh_token = ""
 threads_list = []
 _token_refresh_lock = threading.Lock()
+on_retry_exhausted = "ask"  # "ask" | "ignore" | "abort" — set at startup
+_stored_username = ""       # Credentials stored at login for automatic re-login
+_stored_password = ""
 _threads_list_lock = threading.Lock()
 global_pbar = None
 _global_pbar_lock = threading.Lock()
@@ -186,8 +189,10 @@ def new_token():
             finally:
                 if attempt < ERROR_MAX_RETRY - 1:
                     sleep(WAIT_BEFORE_RETRY)
-        logging.critical("Persistent error in refresh_token")
+        # Refresh token exhausted — attempt full re-login with stored credentials
-        raise httpx.RequestError(message="Persistent error in refresh_token")
+        logging.warning("Refresh token exhausted. Attempting re-login with stored credentials.")
+        _do_login(_stored_username, _stored_password)
+        logging.info("Re-login successful. New tokens acquired.")
 
 
 def api_call_with_retry(func):
@@ -212,7 +217,10 @@ def api_call_with_retry(func):
                     
                     if isinstance(exc, httpx.HTTPStatusError) and exc.response.status_code == 401:
                         logging.info(f"Token expired for {func_name}. Refreshing token.")
-                        new_token()
+                        try:
+                            new_token()
+                        except (httpx.RequestError, httpx.HTTPStatusError) as token_exc:
+                            logging.warning(f"Token refresh/re-login failed for {func_name}: {token_exc}")
                     
                     if attempt < ERROR_MAX_RETRY - 1:
                         sleep(WAIT_BEFORE_RETRY)
@@ -225,32 +233,41 @@ def api_call_with_retry(func):
                             sleep(WAIT_BEFORE_NEW_BATCH_OF_RETRIES)
                             break # Exit for loop to restart batch in while True
                         else:
-                            # All automatic batches exhausted, ask the user
+                            # All automatic batches exhausted — apply on_retry_exhausted policy
                             with _user_interaction_lock:
-                                console.print(f"\n[bold red]Persistent error in {func_name} after {batch_count} batches ({total_attempts} attempts).[/bold red]")
+                                if on_retry_exhausted == "ignore":
-                                console.print(f"[red]Exception: {exc}[/red]")
-                                
-                                choice = questionary.select(
-                                    f"What would you like to do for {func_name}?",
-                                    choices=[
-                                        "Retry (try another batch of retries)",
-                                        "Ignore (return None and continue)",
-                                        "Stop script (critical error)"
-                                    ]
-                                ).ask()
-                                
-                                if choice == "Retry (try another batch of retries)":
-                                    logging.info(f"User chose to retry {func_name}. Restarting batch sequence.")
-                                    batch_count = 1 # Reset batch counter for the next interactive round
-                                    break # Exit for loop to restart batch in while True
-                                elif choice == "Ignore (return None and continue)":
-                                    # Retrieve context if available
                                     ctx = getattr(thread_local_storage, "current_patient_context", {"id": "Unknown", "pseudo": "Unknown"})
-                                    logging.warning(f"[IGNORE] User opted to skip {func_name} for Patient {ctx['id']} ({ctx['pseudo']}). Error: {exc}")
+                                    logging.warning(f"[AUTO-IGNORE] Skipping {func_name} for Patient {ctx['id']} ({ctx['pseudo']}). Error: {exc}")
                                     return None
-                                else:
+
-                                    logging.critical(f"User chose to stop script after persistent error in {func_name}.")
+                                elif on_retry_exhausted == "abort":
-                                    raise httpx.RequestError(message=f"Persistent error in {func_name} (stopped by user)")
+                                    logging.critical(f"[AUTO-ABORT] Stopping script after persistent error in {func_name}. Error: {exc}")
+                                    raise httpx.RequestError(message=f"Persistent error in {func_name} (auto-aborted)")
+
+                                else:  # "ask" — display error then interactive prompt
+                                    console.print(f"\n[bold red]Persistent error in {func_name} after {batch_count} batches ({total_attempts} attempts).[/bold red]")
+                                    console.print(f"[red]Exception: {exc}[/red]")
+
+                                    choice = questionary.select(
+                                        f"What would you like to do for {func_name}?",
+                                        choices=[
+                                            "Retry (try another batch of retries)",
+                                            "Ignore (return None and continue)",
+                                            "Stop script (critical error)"
+                                        ]
+                                    ).ask()
+
+                                    if choice == "Retry (try another batch of retries)":
+                                        logging.info(f"User chose to retry {func_name}. Restarting batch sequence.")
+                                        batch_count = 1  # Reset batch counter for the next interactive round
+                                        break  # Exit for loop to restart batch in while True
+                                    elif choice == "Ignore (return None and continue)":
+                                        ctx = getattr(thread_local_storage, "current_patient_context", {"id": "Unknown", "pseudo": "Unknown"})
+                                        logging.warning(f"[IGNORE] User opted to skip {func_name} for Patient {ctx['id']} ({ctx['pseudo']}). Error: {exc}")
+                                        return None
+                                    else:
+                                        logging.critical(f"User chose to stop script after persistent error in {func_name}.")
+                                        raise httpx.RequestError(message=f"Persistent error in {func_name} (stopped by user)")
 
     return wrapper
 
@@ -259,51 +276,56 @@ def api_call_with_retry(func):
 # BLOCK 3: AUTHENTICATION
 # ============================================================================
 
-def login():
+def _do_login(username, password):
+    """Performs the two-step authentication (IAM → RC) with the given credentials.
+    Updates global access_token and refresh_token on success.
+    Raises httpx.RequestError or httpx.HTTPStatusError on failure.
+    Must NOT acquire _token_refresh_lock (caller's responsibility).
+    """
     global access_token, refresh_token
 
+    client = get_httpx_client()
+    client.base_url = IAM_URL
+    response = client.post(API_AUTH_LOGIN_ENDPOINT,
+                           json={"username": username, "password": password},
+                           timeout=20)
+    response.raise_for_status()
+    master_token = response.json()["access_token"]
+    user_id = response.json()["userId"]
+
+    client = get_httpx_client()
+    client.base_url = RC_URL
+    response = client.post(API_AUTH_CONFIG_TOKEN_ENDPOINT,
+                           headers={"Authorization": f"Bearer {master_token}"},
+                           json={"userId": user_id, "clientId": RC_APP_ID,
+                                 "userAgent": "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/137.0.0.0 Safari/537.36"},
+                           timeout=20)
+    response.raise_for_status()
+    access_token = response.json()["access_token"]
+    refresh_token = response.json()["refresh_token"]
+
+
+def login():
+    global _stored_username, _stored_password
+
     user_name = (questionary.text("login :", default=DEFAULT_USER_NAME).ask())
     password = (questionary.password("password :", default=DEFAULT_PASSWORD).ask())
     if not (user_name and password):
         return "Exit"
 
     try:
-        client = get_httpx_client()
+        _do_login(user_name, password)
-        client.base_url = IAM_URL
-        response = client.post(API_AUTH_LOGIN_ENDPOINT, json={"username": user_name, "password": password},
-                               timeout=20)
-        response.raise_for_status()
-        master_token = response.json()["access_token"]
-        user_id = response.json()["userId"]
     except httpx.RequestError as exc:
         print(f"Login Error : {exc}")
         logging.warning(f"Login Error : {exc}")
         return "Error"
     except httpx.HTTPStatusError as exc:
         print(f"Login Error : {exc.response.status_code} for Url {exc.request.url}")
-        logging.warning(
+        logging.warning(f"Login Error : {exc.response.status_code} for Url {exc.request.url}")
-            f"Login Error : {exc.response.status_code} for Url {exc.request.url}")
-        return "Error"
-
-    try:
-        client = get_httpx_client()
-        client.base_url = RC_URL
-        response = client.post(API_AUTH_CONFIG_TOKEN_ENDPOINT, headers={"Authorization": f"Bearer {master_token}"},
-                              json={"userId": user_id, "clientId": RC_APP_ID,
-                                    "userAgent": "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/137.0.0.0 Safari/537.36"},
-                              timeout=20)
-        response.raise_for_status()
-        access_token = response.json()["access_token"]
-        refresh_token = response.json()["refresh_token"]
-    except httpx.RequestError as exc:
-        print(f"Login Error : {exc}")
-        logging.warning(f"Login Error : {exc}")
-        return "Error"
-    except httpx.HTTPStatusError as exc:
-        print(f"Login Error : {exc.response.status_code} for Url {exc.request.url}")
-        logging.warning(f"Login Error : {exc}")
         return "Error"
 
+    _stored_username = user_name
+    _stored_password = password
     print()
     print("Login Success")
     return "Success"
@@ -313,6 +335,87 @@ def login():
 # BLOCK 3B: FILE UTILITIES
 # ============================================================================
 
+def ask_on_retry_exhausted():
+    """Asks the user what to do when all API retry batches are exhausted."""
+    global on_retry_exhausted
+    choice = questionary.select(
+        "On retry exhausted :",
+        choices=[
+            "Ask (interactive prompt)",
+            "Ignore (return None and continue)",
+            "Abort (stop script)"
+        ]
+    ).ask()
+    if choice is None or choice == "Ask (interactive prompt)":
+        on_retry_exhausted = "ask"
+    elif choice == "Ignore (return None and continue)":
+        on_retry_exhausted = "ignore"
+    else:
+        on_retry_exhausted = "abort"
+
+
+def wait_for_scheduled_launch():
+    """Asks the user when to start the processing and waits if needed.
+    Options: Immediately / In X minutes / At HH:MM
+    """
+    choice = questionary.select(
+        "When to start processing ?",
+        choices=["Immediately", "In X minutes", "At HH:MM"]
+    ).ask()
+
+    if choice is None or choice == "Immediately":
+        return
+
+    if choice == "In X minutes":
+        minutes_str = questionary.text(
+            "Number of minutes :",
+            validate=lambda x: x.isdigit() and int(x) > 0
+        ).ask()
+        if not minutes_str:
+            return
+        target_time = datetime.now() + timedelta(minutes=int(minutes_str))
+
+    else:  # "At HH:MM"
+        time_str = questionary.text(
+            "Start time (HH:MM) :",
+            validate=lambda x: bool(re.match(r'^\d{2}:\d{2}$', x)) and
+                               0 <= int(x.split(':')[0]) <= 23 and
+                               0 <= int(x.split(':')[1]) <= 59
+        ).ask()
+        if not time_str:
+            return
+        now = datetime.now()
+        h, m = int(time_str.split(':')[0]), int(time_str.split(':')[1])
+        target_time = now.replace(hour=h, minute=m, second=0, microsecond=0)
+        if target_time <= now:
+            console.print("[yellow]⚠ Specified time is already past. Starting immediately.[/yellow]")
+            return
+
+    print()
+    try:
+        while True:
+            remaining = target_time - datetime.now()
+            if remaining.total_seconds() <= 0:
+                break
+            total_secs = int(remaining.total_seconds())
+            h = total_secs // 3600
+            m = (total_secs % 3600) // 60
+            s = total_secs % 60
+            target_str = target_time.strftime('%H:%M:%S')
+            print(f"\r  Starting in {h:02d}:{m:02d}:{s:02d}... (at {target_str}) — Ctrl+C to cancel  ",
+                  end="", flush=True)
+            sleep(1)
+            # Flush keyboard buffer to prevent stray keystrokes from polluting subsequent prompts
+            while msvcrt.kbhit():
+                msvcrt.getwch()
+        print()
+        console.print("[green]✓ Starting processing.[/green]")
+    except KeyboardInterrupt:
+        print()
+        console.print("[bold red]Launch cancelled by user.[/bold red]")
+        raise SystemExit(0)
+
+
 def load_json_file(filename):
     """
     Load a JSON file from disk.
@@ -1236,6 +1339,12 @@ def main():
     number_of_threads = int((questionary.text("Number of threads :", default="12",
                                               validate=lambda x: x.isdigit() and 0 < int(x) <= MAX_THREADS).ask()))
 
+    print()
+    ask_on_retry_exhausted()
+
+    print()
+    wait_for_scheduled_launch()
+
     print()
     load_inclusions_mapping_config()
     load_organizations_mapping_config()

endobest_organizations.json

@@ -1,704 +0,0 @@
-[
-    {
-        "id": "5703b3d6-e415-40b0-90ea-b168835fd720",
-        "name": "HOPITAL PRIVE NATECIA",
-        "Center_Name": "Hôpital Privé Natécia",
-        "patients_count": 169,
-        "preincluded_count": 0,
-        "included_count": 167,
-        "prematurely_terminated_count": 2
-    },
-    {
-        "id": "1de71a30-840b-4c4b-84fc-281ce1b4a5e1",
-        "name": "SANTE ATLANTIQUE",
-        "Center_Name": "Clinique Santé Atlantique",
-        "patients_count": 159,
-        "preincluded_count": 1,
-        "included_count": 157,
-        "prematurely_terminated_count": 1
-    },
-    {
-        "id": "5e6d7afa-6532-495f-a84a-34f644aeaa0f",
-        "name": "CLINIQUE BELLEDONNE",
-        "Center_Name": "Clinique Belledonne",
-        "patients_count": 158,
-        "preincluded_count": 4,
-        "included_count": 153,
-        "prematurely_terminated_count": 1
-    },
-    {
-        "id": "026a6d39-552f-44b9-8a2d-1ecd705f9e08",
-        "name": "HOPITAL AMERICAIN",
-        "Center_Name": "Hôpital Américain de Paris",
-        "patients_count": 158,
-        "preincluded_count": 1,
-        "included_count": 157,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "bf0f96c1-8bbc-4f2c-b360-4a5b27995a12",
-        "name": "SA CLINIQUE TIVOLI-DUCOS",
-        "Center_Name": "Clinique TIVOLI",
-        "patients_count": 155,
-        "preincluded_count": 1,
-        "included_count": 154,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "aba63d11-0dd7-40e8-a652-384c311bb358",
-        "name": "HOPITAL LYON SUD - HOSPICES CIVILS DE LYON",
-        "Center_Name": "Hôpital Lyon Sud - Hospices Civils de Lyon",
-        "patients_count": 127,
-        "preincluded_count": 0,
-        "included_count": 127,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "8488229d-f426-4bdd-923c-f638041b223c",
-        "name": "HOPITAL JEANNE DE FLANDRE DU CHU DE LILLE",
-        "Center_Name": "CHU de Lille - Hôpital Jeanne de Flandre",
-        "patients_count": 91,
-        "preincluded_count": 1,
-        "included_count": 90,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "31665f8d-0f46-44dc-931f-e3aed8879965",
-        "name": "HOPITAL MAISON BLANCHE CHU REIMS",
-        "Center_Name": "CHU de Reims - Hôpital Maison Blanche",
-        "patients_count": 88,
-        "preincluded_count": 0,
-        "included_count": 88,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "b77b301c-10fa-4eca-bb5b-51506766e158",
-        "name": "HOPITAL CHARLES NICOLLE CHU ROUEN",
-        "Center_Name": "CHU de Rouen Normandie - Hôpital Charles-Nicolle",
-        "patients_count": 84,
-        "preincluded_count": 1,
-        "included_count": 83,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "743d0a1a-7edf-4fe6-9d65-0c14363f2153",
-        "name": "CENTRE HOSPITALIER  UNIVERSITAIRE JEAN MINJOZ BESANCON",
-        "Center_Name": "CHU Jean Minjoz Besançon - Pôle Mère-Femme",
-        "patients_count": 81,
-        "preincluded_count": 0,
-        "included_count": 81,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "855d7aab-9736-40b7-b9ff-dcc6438890ef",
-        "name": "HOPITAL CROIX-ROUSSE - HOSPICES CIVILS DE LYON",
-        "Center_Name": "Hôpital Croix-Rousse - Hospices Civils de Lyon",
-        "patients_count": 68,
-        "preincluded_count": 5,
-        "included_count": 62,
-        "prematurely_terminated_count": 1
-    },
-    {
-        "id": "74a05936-8fb6-4662-8e95-fd1c91621bf2",
-        "name": "GHU APHP SORBONNE UNIVERSITE SITE TENON",
-        "Center_Name": "GHU APHP - Hôpital Tenon",
-        "patients_count": 62,
-        "preincluded_count": 5,
-        "included_count": 56,
-        "prematurely_terminated_count": 1
-    },
-    {
-        "id": "76d2ebcd-5482-4c5d-8221-c94d1de7261e",
-        "name": "CENTRE HOSPITALIER ANNECY-GENEVOIS SITE ANNECY",
-        "Center_Name": "CH Annecy Genevois – Site d’Annecy",
-        "patients_count": 60,
-        "preincluded_count": 0,
-        "included_count": 60,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "006740fa-696c-4ffb-8b77-7a60d0e23617",
-        "name": "HOPITAL PRIVÉ LE BOIS",
-        "Center_Name": "Hôpital Privé le Bois - Lille",
-        "patients_count": 60,
-        "preincluded_count": 1,
-        "included_count": 59,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "a4b3dfea-1220-4987-b287-f58fde1d0ee5",
-        "name": "CENTRE HOSPITALIER UNIVERSITAIRE  COTE DE NACRE",
-        "Center_Name": "CHU de Caen",
-        "patients_count": 59,
-        "preincluded_count": 0,
-        "included_count": 59,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "4aef30cb-778b-409a-b6e2-898bfd91c850",
-        "name": "CENTRE HOSPITALIER GENERAL DE VALENCIENNES",
-        "Center_Name": "CH de Valenciennes",
-        "patients_count": 57,
-        "preincluded_count": 3,
-        "included_count": 54,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "f7d3526b-18d6-43af-b52c-5ca23bac798e",
-        "name": "CENTRE HOSPITALIER REGIONAL D ANGERS",
-        "Center_Name": "CHR d’Angers",
-        "patients_count": 50,
-        "preincluded_count": 0,
-        "included_count": 50,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "1fd6c63b-d909-45d8-8c70-ecb12501c1d1",
-        "name": "HOPITAL DE HAUTEPIERRE",
-        "Center_Name": "CHRU Strasbourg - Hôpital de Hautepierre",
-        "patients_count": 44,
-        "preincluded_count": 2,
-        "included_count": 42,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "d17ddcc4-64db-4cf5-83c5-146f9a060254",
-        "name": "CENTRE HOSPITALIER DE CALAIS.",
-        "Center_Name": "CH de Calais",
-        "patients_count": 42,
-        "preincluded_count": 0,
-        "included_count": 42,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "f6665185-b1ae-4847-a378-652d35158cee",
-        "name": "CLINIQUE BELHARRA",
-        "Center_Name": "Clinique Belharra",
-        "patients_count": 40,
-        "preincluded_count": 0,
-        "included_count": 40,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "fe25553c-4894-4291-b303-c19d2a1c6f0f",
-        "name": "CHU SITE FELIX GUYON (SAINT DENIS)",
-        "Center_Name": "CHU la Réunion - Site Félix Guyon (SAINT DENIS)",
-        "patients_count": 39,
-        "preincluded_count": 6,
-        "included_count": 33,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "12daafee-970b-4781-9121-994d06e3a766",
-        "name": "CHU DE NICE HOPITAL DE L'ARCHET",
-        "Center_Name": "CHU Nice Archet",
-        "patients_count": 38,
-        "preincluded_count": 0,
-        "included_count": 38,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "f07a7374-d731-4fcf-86e9-2f36e5faf342",
-        "name": "CHU MONTPELLIER HOPITAL ARNAUD DE VILLENEUVE",
-        "Center_Name": "CHU Montpellier - Hôpital Arnaud de Villeneuve",
-        "patients_count": 38,
-        "preincluded_count": 0,
-        "included_count": 38,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "9c64545a-b622-4ef9-be0f-f5cc21b9cd66",
-        "name": "HOPITAL NORD - CHU DE GRENOBLE ALPES",
-        "Center_Name": "CHU de Grenoble - Hôpital Nord",
-        "patients_count": 36,
-        "preincluded_count": 0,
-        "included_count": 35,
-        "prematurely_terminated_count": 1
-    },
-    {
-        "id": "c03b88b5-3cd2-4336-9048-19c239baf5ec",
-        "name": "CHRU DE RENNES SITE HOPITAL SUD",
-        "Center_Name": "CHU Rennes",
-        "patients_count": 34,
-        "preincluded_count": 0,
-        "included_count": 34,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "b0ba921e-e24a-41c2-b769-a2aa108cdd58",
-        "name": "CENTRE HOSPITALIER LES ESCARTONS A BRIANCON",
-        "Center_Name": "CH des Escartons de Briançon",
-        "patients_count": 32,
-        "preincluded_count": 1,
-        "included_count": 31,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "b5f30dc5-da3f-4f8b-9a39-33f0fefb7196",
-        "name": "SCM RX TOULOUSE CLINIQUE PASTEUR",
-        "Center_Name": "Clinique Pasteur Toulouse",
-        "patients_count": 32,
-        "preincluded_count": 2,
-        "included_count": 30,
-        "prematurely_terminated_count": 0
-    },
-    {
-        "id": "817429dd-0d7c-4df9-ad70-2f19c205e05a",
-        "name": "CENTRE HOSPITALIER - FALCONAJA - BASTIA",
-        "Center_Name": "CH Bastia",
-        "patients_count": 29,
-        "preincluded_count": 4,
-        "included_count": 25,
-        "prematurely_terminated_count": 0
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endobest_organizations_old.json

@@ -1,704 +0,0 @@
-[
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